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With the battle against the [[Alternative Weapon System]] pressing on, [[Hydron]] shows up to lend a hand. Meanwhile, [[Clay Fermin|Professor Clay]], while inside the lab on the Alternative, receives a video transmission from Neathia, just as [[Mira Fermin|Mira]] and [[Spectra Phantom|Keith]] arrive to make one final appeal. Once the [[Battle Brawlers|Brawlers]] realize Mira and Keith are missing, they deduce that the siblings may have found a way inside, so [[Dan]] uses [[JetKor]] to blast a hole in the Alternative while [[Gus]] and [[Marucho]] stay behind to guard the rear. Gus and [[Vulcan]] are nearly beaten, but Hydron steps in and saves them.
[[Shun]] suggests they find the power reactor of the Alternative, and having memorized the blueprints of the machine, leads the Brawlers through the Alternative. However, they are all quickly caught in a trap against four mysterious [[Bakugan]] that [[Drago (Dan Kuso)|Drago]] could not recognize (they were from [[Neathia]] and [[Gundalia]]). While Mira pleads with her father to abandon his evil plans with [[Zenoheld]], Dan and the others destroy the four unknown [[Bakugan]], as well as the Power Reactor.
As they make their escape, Professor Clay saves Mira from falling debris but is trapped on the ship, while Hydron captures his father so that they will both "go down with the ship." Professor Clay returns to his computer and finds that the video he received depicts Bakugan in war. Just then, the ship explodes, killing the three remaining [[Vexos]] members. The [[Bakugan Battle Brawlers Resistance|Resistance]] goes their separate ways as Keith and Gus thank Dan for showing them the error of their ways. A few weeks later, Marucho has completely repaired [[Bakugan Interspace]] and uses [[Akwimos]] to test it while Shun uses [[Hawktor]] and Dan sticks with Drago. Then they are approached by an [[Ren Krawler|unknown boy]], who asks them if they're the Brawlers.